PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00601.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 161aa    MW: 18172.6 Da    PI: 10.4984
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00601.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-192171256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr+++ +gr++AeIrdp++   ++r++lg+f+t +eAa+a+++a+ +++g+
  Rsa1.0_00601.1_g00007.1 21 RYRGVRRRP-WGRYAAEIRDPVK---KARVWLGTFDTFNEAARAYDKAAIRFRGA 71
                             7********.**********654...5*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-302178IPR001471AP2/ERF domain
PROSITE profilePS5103223.9472178IPR001471AP2/ERF domain
CDDcd000185.31E-322179No hitNo description
SuperFamilySSF541712.48E-222179IPR016177DNA-binding domain
SMARTSM003801.5E-332184IPR001471AP2/ERF domain
PfamPF008471.8E-132170IPR001471AP2/ERF domain
PRINTSPR003673.6E-102233IPR001471AP2/ERF domain
PRINTSPR003673.6E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MAETDKTAAV KTNDGQKKEH RYRGVRRRPW GRYAAEIRDP VKKARVWLGT FDTFNEAARA  60
YDKAAIRFRG AKAKTNFPYP NMVHDESPSQ TVVPSSSTIS DLNLETRFPF PKIQVKSGML  120
LIDLSSRSGS EASSAVMDRS PERPSRLPLD FDLNFPPKPE T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-211878263ATERF1
3gcc_A1e-211878263ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00164DAPTransfer from AT1G28370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113668.17e-89PREDICTED: ethylene-responsive transcription factor 11-like
RefseqXP_013718304.17e-89PREDICTED: ethylene-responsive transcription factor 11-like
SwissprotQ9C5I32e-50ERF76_ARATH; Ethylene-responsive transcription factor 11
TrEMBLA0A078H9F07e-89A0A078H9F0_BRANA; BnaA09g27300D protein
TrEMBLM4EVR87e-89M4EVR8_BRARP; Uncharacterized protein
STRINGBra032901.1-P2e-88(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-36ERF domain protein 11